This paper outlines the classification of 82 Indonesian mango cultivars based on morphological characters, RAPD markers (DNA) and a combination of both. Mango cultivars for classification were sourced from Cukur Gondang Collection Garden, East Java. Results, including coefficients of similarity, are presented and discussed for each method of classification: morphological, RAPD markers or the combination of both. The morphological assessment involved 92 morphological characteristics. Results of a cluster analysis provides some detail on the discerning characteristics for each cluster.